Hossain, Mohammad Uzzal, Neyamat Khan Tanvir, ABZ Naimur Rahman, Zeshan Mahmud Chowdhury, Md Shahadat Hossain, Shajib Dey, Arittra Bhattacharjee et al. From sequence to significance: A thorough investigation of the distinctive genome features uncovered in C. Werkmanii strain NIB003. Gene 933 (2025): 148965. 

Bhattacharjee, A., Md Rakib Hosen, Anika Bushra Lamisa, Ishtiaque Ahammad, Zeshan Mahmud Chowdhury, Tabassum Binte Jamal, Hasan, M., Mohammad Uzzal Hossain, Keshob Chandra Das, Chaman Ara Keya and Md Salimullah (2024). An integrated comparative genomics, subtractive proteomics and immunoinformatics framework for the rational design of a Pan-Salmonella multi-epitope vaccine. PloS one, 19(7), pp.e0292413–e0292413.

Ishtiaque Ahammad, Anika Bushra Lamisa, Bhattacharjee, A., Tabassum Binte Jamal, Md Shamsul Arefin, Zeshan Mahmud Chowdhury, Mohammad Uzzal Hossain, Keshob Chandra Das, Chaman Ara Keya and Md Salimullah (2024). AITeQ: a machine learning framework for Alzheimer’s prediction using a distinctive five-gene signature. Briefings in Bioinformatics, 25(4).

Ishtiaque Ahammad, Anika Bushra Lamisa, Sadia Sharmin, Bhattacharjee, A., Zeshan Mahmud Chowdhury, Ahamed, T., Mohammad Uzzal Hossain, Keshob Chandra Das, Md Salimullah and Chaman Ara Keya (2024). Subtractive genomics study for the identification of therapeutic targets against Cronobacter sakazakii: a threat to infants. Heliyon, pp.e30332–e30332.

Ahammad, I., Bhattacharjee, A., Chowdhury, Z.M., Rahman, A., Hossain, M.U., Dewan, G., Talukder, S., Das, K.C., Keya, C.A. and Salimullah, M. (2024). Gut microbiome composition reveals the distinctiveness between the Bengali people and the Indigenous ethnicities in Bangladesh. Communications Biology, 7(1), pp.1–12.

Ishtiaque Ahammad, Tabassum Binte Jamal, Anika Bushra Lamisa, Bhattacharjee, A., Nayeematul Zinan, Zahid, M., Naimul, M., Faruque, O., Zeshan Mahmud Chowdhury, Mohammad Uzzal Hossain, Keshob Chandra Das, Chaman Ara Keya and Md Salimullah (2024). Subtractive genomics study of Xanthomonas oryzae pv. Oryzae reveals repurposable drug candidate for the treatment of bacterial leaf blight in rice. Journal of Genetic Engineering and Biotechnology, 22(1), pp.100353–100353

Mohammad Uzzal Hossain, Ishtiaque Ahammad, Md. Moniruzzaman, Mahbuba Akter Lubna, Bhattacharjee, A., Zeshan Mahmud Chowdhury, Ahmed, I., Md. Billal Hosen, Biswas, S., Keshob Chandra Das, Chaman Ara Keya and Md. Salimullah (2023). Investigation of pathogenic germline variants in gastric cancer and development of ‘GasCanBase’ database. Cancer reports.

Ishtiaque Ahammad, Tabassum Binte Jamal, Bhattacharjee, A., Zeshan Mahmud Chowdhury, Rahman, S., Md Rakibul Hassan, Mohammad Uzzal Hossain, Keshob Chandra Das, Chaman Ara Keya and Md. Salimullah (2023a). Impact of highly deleterious non-synonymous polymorphisms on GRIN2A protein’s structure and function. PLOS ONE, 18(6), pp.e0286917–e0286917.

Zeshan Mahmud Chowdhury, Tabassum Binte Jamal, Ishtiaque Ahammad, Bhattacharjee, A., Anika Bushra Lamisa, Jannatul Maoa Jani, Md Fahim Israk, Mohammad Uzzal Hossain, Keshob Chandra Das, Chaman Ara Keya and Md. Salimullah (2023). Identification of repurposable drug targets in Mycoplasma pneumoniae using subtractive genomics, molecular docking and dynamics simulation. Heliyon, pp.e21466–e21466.

Ishtiaque Ahammad, Zeshan Mahmud Chowdhury, Bhattacharjee, A., Sheikh Sunzid Ahmed, Akter, F. and Md Salimullah (2023). Structure-based pharmacological screening, molecular docking and dynamic simulation reveals Dexketoprofen as a repurposable drug against Alzheimer’s disease. Informatics in Medicine Unlocked, pp.101380–101380.

Bhattacharjee, A., Muied, A., Ishtiaque Ahammad, Zeshan Mahmud Chowdhury, Farha Matin Juliana, Keshob Chandra Das, Chaman Ara Keya and Md Salimullah (2023). High risk genetic variants of human insulin receptor substrate 1(IRS1) infer structural instability and functional interference. Journal of Biomolecular Structure & Dynamics, pp.1–15.

Mahjerin Nasrin Reza, Mahmud, S., Ferdous, N., Ishtiaque Ahammad, Mohammad Uzzal Hossain, Md. Al Amin and Mohiuddin, M. (2023). Gene silencing of Helicobacter pylori through newly designed siRNA convenes the treatment of gastric cancer. Cancer Medicine.

Abdullah Al‐Mamun, Ishtiaque Ahammad, Sheikh Sunzid Ahmed, Akter, F., Shah Imran Hossain, Zeshan Mahmud Chowdhury, Bhattacharjee, A., Keshob Chandra Das, Chaman Ara Keya and Md Salimullah (2023). Pharmacoinformatics and molecular dynamics simulation approach to identify anti-diarrheal potentials of Centella asiatica (L.) Urb. against Vibrio cholerae. Journal of Biomolecular Structure & Dynamics, pp.1–14.

Bhattacharjee, A., Ahammad, I., Chowdhury, Z.M., Das, K.C., Keya, C.A. and Salimullah, Md. (2022). Proteome-Based Investigation Identified Potential Drug Repurposable Small Molecules Against Monkeypox Disease. Molecular Biotechnology. 

Hossain, M.U., Ferdous, N., Reza, M.N., Ahammad, I., Tiernan, Z., Wang, Y., O’Hanlon, F., Wu, Z., Sarker, S., Mohiuddin, A.K.M., Das, K.C., Keya, C.A. and Salimullah, Md. (2022). Pathogen-driven gene expression patterns lead to a novel approach to the identification of common therapeutic targets. Scientific Reports, 12(1). doi:https://doi.org/10.1038/s41598-022-25102-8.

Ahmed, S.S., Al-Mamun, A., Hossain, S.I., Akter, F., Ahammad, I., Chowdhury, Z.M. and Salimullah, Md. (2022). Virtual screening reveals liquiritigenin as a broad-spectrum inhibitor of SARS-CoV-2 variants of concern: an in silico study. Journal of Biomolecular Structure and Dynamics, pp.1–19.

Chowdhury, Z.M., Bhattacharjee, A., Ahammad, I., Hossain, M.U., Jaber, A.A., Rahman, A., Dev, P.C., Salimullah, Md. and Keya, C.A. (2022). Exploration of Streptococcus core genome to reveal druggable targets and novel therapeutics against S. pneumoniae. PLOS ONE, 17(8), p.e0272945.

Hossain, M.U., Ahammad, I., Bhattacharjee, A., Chowdhury, Z.M., Rahman, A., Rahman, T.A., Omar, T.M., Hasan, M.K., Islam, M.N., Hossain Emon, M.T., Chandra Das, K., Keya, C.A. and Salimullah, M. (2022). Protein-protein interactions network model underlines a link between hormonal and neurological disorders. Informatics in Medicine Unlocked, 28, p.100866.

Hossain, M., Bhattacharjee, A., Emon, M., Chowdhury, Z., Mosaib, M., Mourin, M., Das, K., Keya, C. and Salimullah, M., (2021). Recognition of plausible therapeutic agents to combat COVID-19: An omics data based combined approach. Gene, 771, p.145368.

Ahammad, I., Hossain, M.U., Rahman, A., Chowdhury, Z.M., Bhattacharjee, A., Das, K.C., Keya, C.A. and Salimullah, Md. (2021). Wave-wise comparative genomic study for revealing the complete scenario and dynamic nature of COVID-19 pandemic in Bangladesh. PLOS ONE, 16(9), p.e0258019.

Hossain, M.U., Bhattacharjee, A., Emon, Md.T.H., Chowdhury, Z.M., Ahammad, I., Mosaib, Md.G., Moniruzzaman, Md., Rahman, Md.H., Islam, Md.N., Ahmed, I., Amin, Md.R., Rashed, A., Das, K.C., Keya, C.A. and Salimullah, Md. (2021). Novel mutations in NSP-1 and PLPro of SARS-CoV-2 NIB-1 genome mount for effective therapeutics. Journal of Genetic Engineering and Biotechnology, 19(1).

Rahman, A., Susmi, T.F., Yasmin, F., Bhattacharjee, A., Hossain, M.U., Das, K.C., Keya, C.A. and Salimullah, Md. (2021). Unveiling ancestral relations, host–pathogen interactions and comparative viral miRNA insights of dengue virus serotypes. Network Modeling Analysis in Health Informatics and Bioinformatics, 10(1).

Jahan, M., Bhattacharjee, A., Rahmat, R., Islam, S.M.R., Akhter, T., Ahammad, I., Hossain, M.U., Munshi, S.U. and Salimullah, M. (2021). Genomic Surveillance of SARS-CoV-2 Viruses Collected during the Ending Phase of the First Wave of the COVID-19 Pandemic in Bangladesh. Microbiology Resource Announcements, 10(29), p.e0049621.

Moniruzzaman, M., Hossain, M., Islam, M., Rahman, M., Ahmed, I., Rahman, T., Bhattacharjee, A., Amin, M., Rashed, A., Keya, C., Das, K. and Salimullah, M., (2020). Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing. Microbiology Resource Announcements, 9(28).

Arittra Bhattacharjee, Mohammad Uzzal Hossain, Zeshan Mahmud Chowdhury, et al. (2020). Insight of druggable cannabinoids against estrogen receptor β in breast cancer. Journal of Biomolecular Structure and Dynamics;1-10.

Moniruzzaman, Md., Ahmed, I., Huq, S., All Mahmud, Md.S., Begum, S., Mahzabin Amin, U.S., Rahman, Md.H., Sarker, P.K., Hossain, M.U., Das, K.C. and Salimullah, Md. (2019). Association of polymorphism in heat shock protein 70 genes with type 2 diabetes in Bangladeshi population. Molecular Genetics & Genomic Medicine, 8(2).

​Mohammad Uzzal Hossain, Taimur Md Omar, Iftekhar Alam, Keshob Chandra Das, A. K.M Mohiuddin, Chaman Ara Keya, Md Salimullah. (2018) Pathway based therapeutic targets identification and development of an interactive database CampyNIBase of Campylobacter jejuni RM1221 through non-redundant protein dataset. PLOSOne;13(6):e0198170.0198170.

Mohammad Uzzal Hossain, Chaman Ara Keya, Taimur Md. Omar, Keshob Chandra Das, Abu Hashem, Md Arif Khan, SM Rakib-Uz-Zaman and M Salimullah (2018). An Immunopharmacoinformatics Approach in Development of Vaccine and Drug Candidates for West Nile Virus. Frontiers in Chemistry. 6:246.

Mohammad Uzzal Hossain, Taimur Md. Omar, Arafat Rahman Oany, K M Kaderi Kibria, Abu Jafar Shibly et al. Design of peptide based epitope vaccine and further binding site scrutiny led to groundswell in drug discovery against Lassa virus. 3 Biotech. (2018) Feb;8(2):81.

​Mohammad Uzzal Hossain, Keshob Chandra Das, U S Mahzabin amin, Chaman Ara Keya, Md Salimullah. (2017). Hossain MU. Sorting Out Non-Synonymous Single Nucleotide Polymorphism Leads to Novel Biomarker Discovery for Disease Prognosis. Current Trends in Biomedical Engineering & Bioscience.; 3(2): 555608.

​Mohammad Uzzal Hossain, Md Arif Khan, Md Abu Hashem, Monirul Islam, Mohammad NeazMorshed, ChamanAra Keya, and Md Salimullah. (2016). "Finding Potential Therapeutic Targets against Shigellaflexneri through Proteome Exploration." Frontiers in Microbiology 7. Front. Microbiol., 22 November 2016.

Mohammad Uzzal Hossain, Abu Hashem, ChamanAra Keya, Md Salimullah. (2016). Therapeutics Insight with Inclusive Immunopharmacology Explication of Human Rotavirus A for the Treatment of Diarrhea. Frontiers in Pharmacology.7,153.

Mohammad Uzzal Hossain, Arafat Rahman Oany, Shah Adil Ishtiyaq Ahmed, Md. AnayetHasan, Md. Arif Khan. (2016) Identification of potential inhibitor and enzyme-inhibitor complex on trypanothione reductase to control Chagas disease. Computational Biology and Chemistry. Dec;65:29-36.

​Mohammad Uzzal Hossain, Md. Arif Khan, S.M. Rakib-Uz-Zaman, Mohammad Tuhin Ali, Md. Saidul Islam, Chaman Ara Keya, Md. Salimullah (2016) Treating diabetes mellitus: Pharmacophore based designing of potential drugs from Gymnemasylvestre against insulin receptor protein. BioMed Research International, Volume 2016, Article ID 3187647, 14 pages

Mohammad Uzzal Hossain, Abu Zaffar Shibly, Taimur Md. Omar, FatamaTous Zohora,Umme Sara Santona, MdJakir Hossain, Md. SadekHossain Khoka, ChamanAra Keya, Md. Salimullah (2016). Towards finding the linkage between metabolic and age-related disorders using semantic gene data network analysis. Bioinformation 12(1): 22-26.